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NGS

NGS lab software, configured for your assays

Run targeted panels, exomes, whole genomes, and single-cell assays on one system, with new assays live in weeks instead of months-long development cycles

THE PROBLEM

Where legacy LIMS break down

An NGS lab runs a dozen library prep chemistries against three or four sequencers, and every assay has its own acceptance criteria, its own review path, and its own report format. A legacy LIMS built around a fixed set of workflows can’t hold that variability, so exceptions get managed in  spreadsheets and homegrown scripts outside the system of records – workarounds where errors can slip in.
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The same fragmentation shows up in the data. Reagent lots, instruments, and reviewer decisions live apart from sample and result data, which is manageable until there’s an out-of-spec investigation or a regulatory submission. And because the underlying system doesn’t flex, the cost shows up when something changes. A new panel means a development ticket. A sequencer upgrade means re-mapping data capture. The system stays rigid when the lab needs to move. Meanwhile sample volume keeps climbing and the queue does not care.
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Labbit configures NGS workflows visually in BPMN, so a new assay is a configuration change rather than a development cycle. Every sample, reagent lot, instrument run, and reviewer decision lands in one knowledge graph, which is why investigations that take days in a legacy system take minutes here.

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PRE-CONFIGURED WORKFLOWS

Workflows out of the box

Built visually in BPMN, adapted to your lab, and changed without a vendor release.

Targeted Amplicon Sequencing; Hybrid-Capture Targeted Panel; Whole Exome Sequencing (WES); Short-Read Whole Genome Sequencing; Long-Read Whole Genome Sequencing; Targeted Long-Read Sequencing; Bulk RNA Sequencing; mRNA Sequencing; Total RNA / Transcriptome Sequencing; Small RNA Sequencing; Fusion / Targeted RNA Sequencing; Single-Cell RNA Sequencing; Single-Cell Immune Profiling; Single-Cell Multiome; 16S / Amplicon Metagenomics; Shotgun Metagenomics; Microbial Whole Genome Sequencing; Full-Length Isoform Sequencing
Targeted Amplicon Sequencing

Instruments and platforms

Instruments and platforms

Illumina MiSeq; Illumina NextSeq; Illumina NovaSeq; PacBio Revio; PacBio Vega; Ion Torrent Genexus; Ion Torrent GeneStudio S5; 10x Genomics Chromium
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FAQ

Frequently Asked Questions

Does Labbit support Illumina and PacBio sequencers?

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Yes. Labbit integrates with Illumina MiSeq, NextSeq, and NovaSeq, PacBio Revio and Vega, and Ion Torrent Genexus and GeneStudio S5. Run registration, status, and run metrics come back through the instrument integration and attach to every sample on the flow cell automatically.

How long does it take to add a new NGS assay?

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Assays are configured visually in BPMN rather than developed, so new panels and prep chemistries go live without a development cycle. Customers report implementation and change deployment 2 to 4 times faster than legacy LIMS.

Is Labbit CLIA and CAP ready?

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Yes. Labbit provides 21 CFR Part 11 compliant electronic records and signatures, role-based review and sign-off, and a complete audit trail across samples, reagent lots, instruments, and operators.

Can Labbit handle high sample volume?

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Yes. Helix processes roughly 100,000 samples per day on Labbit. The entity-centric data model and graph backend are built for throughput rather than retrofitted for it.

Do the NGS workflows come pre-configured?

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Yes. Labbit ships 18 pre-configured NGS workflows covering targeted panels, exome, whole genome, RNA, single-cell, and methylation. They are included with the platform and act as the starting point for your configuration, not a fixed template you have to work around.

SEE IT ON YOUR ASSAYS

See your workflow running in Labbit

Bring an assay your team runs today. We’ll show you how it’s configured, executed, and reviewed.